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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11370118_11371141_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11370118 - 11371141
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GGCCTGTTAATA
Flanking Amino Acid:
AEKLKPGDLVGVNKDSYLIL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
46.7
-0.2
2
53.57
39.1

Associated Gene:

Gene:
PSMC3
Ensembl Gene ID:
ENSAPLG00000008009
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008363
11368172 - 11378784
10613