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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11371205_11373015_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11371205 - 11373015
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTGCTTACTT
Flanking Amino Acid:
CAVIKTSTRQTYFLPVIGLV
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
77.4
0.62
0.7
72.2
26.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
65.3
0.56
2
87.41
38.9

Associated Gene:

Gene:
PSMC3
Ensembl Gene ID:
ENSAPLG00000008009
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008363
11368172 - 11378784
10613