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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11374325_11378092_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11374325 - 11378092
Intron Length:
3768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGCGG
5'SS Class:
major
3'SS Sequence:
ATGCTGAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATTTCTACCT
Flanking Amino Acid:
RTRLLDSEIKIMKSEVLRVT
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.3
46.1
49.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
62.3
0.28
1.1
52.2
45.6
Minor 5ss
34.3
-1.8
3.5
47.2
48.2
Minor BPS
52.7
0.16
1.9
76.75
40

Associated Gene:

Gene:
PSMC3
Ensembl Gene ID:
ENSAPLG00000008009
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008363
11368172 - 11378784
10613