Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11380321_11382937_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11380321 - 11382937

Intron Length:

2617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

TCTCTGTTCACA

Flanking Amino Acid:

CWMIQKELDKALESIEKGQE

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

1.2

30.2

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

80.6

0.69

0.8

75.1

33.3

Minor 5ss

37.3

-1.4

2.8

49.7

46.6

Minor BPS

46.6

-0.2

2.4

63.68

43.1

Associated Gene:

Gene:

RAPSN

Ensembl Gene ID:

ENSAPLG00000008323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008671

11378712 - 11388049

9338