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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11383061_11383157_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11383061 - 11383157
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTC
5'SS Class:
major
3'SS Sequence:
CCCGCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
CAAAGCACAACA
Flanking Amino Acid:
DIHLSRKDVQTAFPRYDSAM
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.3
43.5
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
74.7
0.56
0.8
68.2
32
Minor 5ss
33.6
-1.9
3.7
50.1
46.4
Minor BPS
40.4
-0.7
2.1
47.81
41.6

Associated Gene:

Gene:
RAPSN
Ensembl Gene ID:
ENSAPLG00000008323
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008671
11378712 - 11388049
9338