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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11383257_11383589_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11383257 - 11383589
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGGGT
5'SS Class:
major
3'SS Sequence:
CTATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAA
U12 Branch Point Sequence:
TCTTGCTGACTA
Flanking Amino Acid:
RLADAMDCCEESMKIALQHG
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
62.8
41.6
Major BPS
59.8
0.24
1.2
61.9
33.9
Major PPT
86.8
0.83
0.7
84.8
29.8
Minor 5ss
36.4
-1.5
3.7
55.4
48.8
Minor BPS
47.8
-0.1
2.1
63.53
43.4

Associated Gene:

Gene:
RAPSN
Ensembl Gene ID:
ENSAPLG00000008323
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008671
11378712 - 11388049
9338