Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11383749_11385039_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11383749 - 11385039

Intron Length:

1291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCAGTAA

5'SS Class:

major

3'SS Sequence:

GTTTGCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACCTAC

U12 Branch Point Sequence:

TTTGCTGTACCT

Flanking Amino Acid:

SLGNFYAQIKDYEKALFFPC

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

61.4

35.1

Major BPS

51.1

0.03

1.2

50.4

36.3

Major PPT

80.8

0.69

0.9

73.7

36.9

Minor 5ss

28.9

-2.4

3.4

37.2

47.4

Minor BPS

49.8

0.06

2.3

78.9

Associated Gene:

Gene:

RAPSN

Ensembl Gene ID:

ENSAPLG00000008323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008671

11378712 - 11388049

9338