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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11385379_11387857_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11385379 - 11387857
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTTTTATAAACA
Flanking Amino Acid:
EMGRYKDMLKFAVVQIDTAR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.6
0.58
1
76.4
31.4
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
56
0.19
1.9
71.68
40.7

Associated Gene:

Gene:
RAPSN
Ensembl Gene ID:
ENSAPLG00000008323
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008671
11378712 - 11388049
9338