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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11405115_11410456_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11405115 - 11410456
Intron Length:
5342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAATAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTATTTTAATA
Flanking Amino Acid:
SSPLSVLTSSGSSPSSSSSS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.5
0.53
1
68.9
40.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
66.6
0.52
1.3
70.89
36

Associated Gene:

Gene:
CELF1
Ensembl Gene ID:
ENSAPLG00000020823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034042
11391502 - 11435651
44150