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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11413627_11414928_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11413627 - 11414928
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
GCTTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
CTAGCTTTATTT
Flanking Amino Acid:
LNTLGPQYLALLQQTAAASS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
83.1
0.75
0.8
77.1
36.1
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
52.9
0.17
1.7
67.81
44

Associated Gene:

Gene:
CELF1
Ensembl Gene ID:
ENSAPLG00000020823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034042
11391502 - 11435651
44150