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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11415483_11415665_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11415483 - 11415665
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TCCTTCTGCATT
Flanking Amino Acid:
ILRGPDGLSRGCAFVTFTTR
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
81.1
0.7
0.8
73.6
36.3
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
48.9
-0
1.9
67.49
44.2

Associated Gene:

Gene:
CELF1
Ensembl Gene ID:
ENSAPLG00000020823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034042
11391502 - 11435651
44150