About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11415801_11418269_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11415801 - 11418269
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CATCCTTTAATT
Flanking Amino Acid:
MKPADSEKNNAVEDRKLFIG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.7
0.65
0.8
77.5
36.4
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
71
0.74
1.2
78.34
38.2

Associated Gene:

Gene:
CELF1
Ensembl Gene ID:
ENSAPLG00000020823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034042
11391502 - 11435651
44150