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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11418822_11419452_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11418822 - 11419452
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTTAGCT
Flanking Amino Acid:
TGAKTPPQSKGCCFVTFYTR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.3
0.61
1
70.2
40
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
67.8
0.64
1.8
85.1
41.2

Associated Gene:

Gene:
CELF1
Ensembl Gene ID:
ENSAPLG00000020823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034042
11391502 - 11435651
44150