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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11450847_11451379_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11450847 - 11451379
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
CTGTCTGTGACA
Flanking Amino Acid:
ETRYLCCSAQEWQALGVEQL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
68.3
0.41
1.1
64
41.6
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
51.6
0.04
2.1
65.32
42

Associated Gene:

Gene:
NDUFS3
Ensembl Gene ID:
ENSAPLG00000008862
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027456
11450517 - 11464265
13749