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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11451572_11452639_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11451572 - 11452639
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGATTTTCACT
Flanking Amino Acid:
ATMVAAYLIQLHHWTPQEAI
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
50.4
0.09
1.8
68.47
42.8

Associated Gene:

Gene:
NDUFS3
Ensembl Gene ID:
ENSAPLG00000008862
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027456
11450517 - 11464265
13749