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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11455395_11457948_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11455395 - 11457948
Intron Length:
2554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCAAACCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
GATACCATAAAT
Flanking Amino Acid:
PLRLLTDILTDGVPCSQNPT
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
58.9
0.2
0.9
50.7
31
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
56.1
0.27
1.8
73.99
41.5

Associated Gene:

Gene:
KBTBD4
Ensembl Gene ID:
ENSAPLG00000008802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009145
11453036 - 11459428
6393