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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11459795_11460523_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11459795 - 11460523
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
TTGCTCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTTAC
U12 Branch Point Sequence:
TGGGAGTTACTG
Flanking Amino Acid:
PAGGSAAETRPTVRPKNEVE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.4
54.5
49.7
Major BPS
48.4
-0.1
1.3
41.1
41.1
Major PPT
79.5
0.66
0.8
78
30.8
Minor 5ss
34.6
-1.8
2.9
36.9
40.4
Minor BPS
37.6
-1
2.3
40.19
44.2

Associated Gene:

Gene:
NDUFS3
Ensembl Gene ID:
ENSAPLG00000008862
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009225
11459334 - 11464265
4932