Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11462925_11464097_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11462925 - 11464097

Intron Length:

1173

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGCACTGTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

GTCCTTTGCACT

Flanking Amino Acid:

KDFPLSGYVEVRYDDEVKRV

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

75.1

35.1

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

66.9

0.38

57.7

43.1

Minor 5ss

30.7

-2.2

3.7

46.1

49.1

Minor BPS

45.5

-0.2

1.8

62.21

Associated Gene:

Gene:

NDUFS3

Ensembl Gene ID:

ENSAPLG00000008862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027456

11450517 - 11464265

13749

ENSAPLT00000009225

11459334 - 11464265

4932