Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11563115_11566619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11563115 - 11566619

Intron Length:

3505

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TTG|GCCATTTTT

5'SS Class:

major

3'SS Sequence:

AGCTGCTATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

ATGAACACAACT

Flanking Amino Acid:

VLTCKICWRRAVLSMTR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.2

0.31

1.3

67.4

43.4

Major BPS

58.9

0.22

49.8

35.1

Major PPT

65.2

0.34

54.9

44.4

Minor 5ss

31.4

-2.1

42.7

Minor BPS

45.8

-0.2

66.12

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024392

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018314

11562943 - 11566642

3700