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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11579403_11601816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11579403 - 11601816
Intron Length:
22414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.9
40.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
36
-1.6
3
45.9
42.4
Minor BPS
62.6
0.48
1.6
75.01
42.5

Associated Gene:

Gene:
FUT8
Ensembl Gene ID:
ENSAPLG00000009017
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009408
11579293 - 11670862
91570