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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1193847_1194224_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1193847 - 1194224
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCTGTTTATT
Flanking Amino Acid:
RHDAIFRKVRGILNKLTPEK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.6
0.78
0.7
81.9
29.6
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
49
0
2.3
76.71
40

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251