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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1195317_1195399_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1195317 - 1195399
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTTGCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTGTTAAACA
Flanking Amino Acid:
EFENRTRNVDIYDKHDGPLL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.3
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.2
0.7
0.8
73.4
37.1
Minor 5ss
55.8
0.2
2.7
75.2
35.4
Minor BPS
48.8
-0
2.1
62.04
45

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251