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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1196079_1196241_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1196079 - 1196241
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCATTTGTAACA
Flanking Amino Acid:
GPRLDHAKAKSLMDQYFARM
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
54.4
0.13
2
66.93
40.2

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251