About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11977574_11978396_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11977574 - 11978396
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCTG
5'SS Class:
major
3'SS Sequence:
ATTTCACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCTCATTTCACT
Flanking Amino Acid:
ASGFQATFTSVRIQRKPSSH
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
65.4
46
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.3
0.71
0.8
74.1
35
Minor 5ss
36.6
-1.5
3.3
46.2
43.5
Minor BPS
52.2
0.15
2
73.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005785
11977539 - 11989308
11770
ENSAPLT00000017940
11977369 - 11990083
12715