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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11978623_11979359_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978623 - 11979359
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TGTGTATGAAAG
Flanking Amino Acid:
VWLIRTRSRKISLHFRAFEL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.6
41.7
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
43.1
-0.8
2.9
57.5
46.8
Minor BPS
44.4
-0.5
1.9
51.37
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043572
11975406 - 11990083
14678
ENSAPLT00000017940
11977369 - 11990083
12715
ENSAPLT00000005785
11977539 - 11989308
11770