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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11979476_11980331_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11979476 - 11980331
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GTTTCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGGTGCTGAACT
Flanking Amino Acid:
VAKINKLYNCSRCSTIIDAA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
80.2
0.68
0.8
77.7
31
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
59.7
0.38
1.9
77.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043572
11975406 - 11990083
14678
ENSAPLT00000017940
11977369 - 11990083
12715
ENSAPLT00000005785
11977539 - 11989308
11770