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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11981723_11981848_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11981723 - 11981848
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AGTATCTTATAT
Flanking Amino Acid:
VKIMWEYISPADRPDFKKFE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
83.2
0.75
0.8
77
35.6
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
51.4
0.12
1.7
69.18
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043572
11975406 - 11990083
14678
ENSAPLT00000017940
11977369 - 11990083
12715
ENSAPLT00000005785
11977539 - 11989308
11770