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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11983726_11984757_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11983726 - 11984757
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTTCTCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACCA
Flanking Amino Acid:
VFNRILKVNKDCSRYLQEGD
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.3
0.66
0.8
73.8
29.8
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
63.4
0.42
1.8
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043572
11975406 - 11990083
14678
ENSAPLT00000017940
11977369 - 11990083
12715
ENSAPLT00000005785
11977539 - 11989308
11770