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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1198612_1198872_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1198612 - 1198872
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
ACTTCTGGTACT
Flanking Amino Acid:
PRTQTPPLGQPPQLGLKTNP
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
87.3
0.84
0.7
84.9
29.4
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
44.5
-0.3
2.3
66.49
44.2

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251