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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11986573_11989221_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11986573 - 11989221
Intron Length:
2649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTCCTTGCTT
Flanking Amino Acid:
LILTEEQGNRATEPTQVTTE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88.4
0.86
0.7
84.2
30.7
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
49.3
0.03
3.5
82.57
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005785
11977539 - 11989308
11770