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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_11986573_11989736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11986573 - 11989736
Intron Length:
3164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTCCTTGCTT
Flanking Amino Acid:
IQDNSGNTTATTEPTQVTTE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88.4
0.86
0.7
84.2
30.7
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
49.3
0.03
3.5
82.57
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043572
11975406 - 11990083
14678
ENSAPLT00000017940
11977369 - 11990083
12715