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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1200262_1200707_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1200262 - 1200707
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTGTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
DKGFVNILMTSFLQYISSEV
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.6
0.76
0.9
76.9
42.1
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251