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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12011166_12015915_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12011166 - 12015915
Intron Length:
4750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TTTTGATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATGTTTTGATT
Flanking Amino Acid:
KPSVLQPAQQFNVKKTAEPV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
36.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.85
0.8
85.4
34.1
Minor 5ss
34
-1.8
3.1
43.1
38
Minor BPS
56.4
0.28
1.3
68.66
36.8

Associated Gene:

Gene:
SYT13
Ensembl Gene ID:
ENSAPLG00000006046
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006270
12010974 - 12024982
14009