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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1201180_1201374_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1201180 - 1201374
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTC
5'SS Class:
strong_major
3'SS Sequence:
TATGTAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAACT
Flanking Amino Acid:
FPGKGKALFQVNQWLTWLET
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.6
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
1
64.2
41.3
Minor 5ss
47.8
-0.2
2.9
67.4
44
Minor BPS
63
0.49
2.2
88.66
36.3

Associated Gene:

Gene:
EIF4G2
Ensembl Gene ID:
ENSAPLG00000005642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005985
1193190 - 1201440
8251