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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12018220_12019822_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12018220 - 12019822
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AGGTCCTTAAAG
Flanking Amino Acid:
KAELCVALLEAMHGRMSGDQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.7
0.78
0.7
76.3
32.3
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
66.5
0.38
1.5
64.25
43

Associated Gene:

Gene:
SYT13
Ensembl Gene ID:
ENSAPLG00000006046
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006270
12010974 - 12024982
14009