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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12024447_12024677_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12024447 - 12024677
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTGCATGATC
Flanking Amino Acid:
SKQLKDLLGNDVSVKVTLRH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.2
0.64
0.8
72.7
32.2
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
49.8
-0
2
67.47
38.4

Associated Gene:

Gene:
SYT13
Ensembl Gene ID:
ENSAPLG00000006046
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006270
12010974 - 12024982
14009