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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12043833_12047013_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12043833 - 12047013
Intron Length:
3181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TAATCCCCACCC
Flanking Amino Acid:
QETINRNLTRGDKRLQREKS
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
46.7
-0.2
2.1
62
42.6

Associated Gene:

Gene:
PRDM11
Ensembl Gene ID:
ENSAPLG00000006096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021649
12040160 - 12065158
24999
ENSAPLT00000006320
12040160 - 12090921
50762
ENSAPLT00000042906
12040160 - 12079677
39518
ENSAPLT00000039195
12039527 - 12065305
25779