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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12047202_12062682_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12047202 - 12062682
Intron Length:
15481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ACCTCGCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCCTTCTCACCT
Flanking Amino Acid:
GTDETKANWMRYVIISREER
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
66.4
0.37
0.9
61.9
34.2
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
48.7
-0
1.9
63.97
46.4

Associated Gene:

Gene:
PRDM11
Ensembl Gene ID:
ENSAPLG00000006096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021649
12040160 - 12065158
24999
ENSAPLT00000006320
12040160 - 12090921
50762
ENSAPLT00000042906
12040160 - 12079677
39518
ENSAPLT00000039195
12039527 - 12065305
25779