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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12062751_12063713_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12062751 - 12063713
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
AGCTAGTTCACA
Flanking Amino Acid:
DKSAGFFSWLIVDKNNRYKS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.2
0.86
0.6
84
24.1
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
42.7
-0.5
2.5
55.2
43.5

Associated Gene:

Gene:
PRDM11
Ensembl Gene ID:
ENSAPLG00000006096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042906
12040160 - 12079677
39518
ENSAPLT00000039195
12039527 - 12065305
25779
ENSAPLT00000021649
12040160 - 12065158
24999
ENSAPLT00000006320
12040160 - 12090921
50762