Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12064276_12064364_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12064276 - 12064364

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

TGGTTTGGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GCTTTCCTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

72.6

37.3

Major BPS

81.9

0.79

0.9

80.1

Major PPT

60.6

0.24

1.2

57.5

47.4

Minor 5ss

39.2

-1.2

3.4

53.4

43.8

Minor BPS

62.4

0.47

1.7

76.83

Associated Gene:

Gene:

PRDM11

Ensembl Gene ID:

ENSAPLG00000006096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021649

12040160 - 12065158

24999