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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12064469_12065039_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12064469 - 12065039
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
GTTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTAACTTAAAGT
Flanking Amino Acid:
PHRDQEYGQPCSGRPDPQSM
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
63.7
41.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
81.5
0.71
0.8
73.7
36.9
Minor 5ss
32.1
-2
3.4
40.7
40.7
Minor BPS
48.2
-0
2
66.04
44.5

Associated Gene:

Gene:
PRDM11
Ensembl Gene ID:
ENSAPLG00000006096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021649
12040160 - 12065158
24999
ENSAPLT00000006320
12040160 - 12090921
50762
ENSAPLT00000042906
12040160 - 12079677
39518
ENSAPLT00000039195
12039527 - 12065305
25779