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Intron Name: Anas_platyrhynchos_platyrhynchos_5_12065159_12079175_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12065159 - 12079175

Intron Length:

14017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TGGCTGTTCACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.8

38.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

89.3

0.88

0.6

87.5

22.7

Minor 5ss

28.1

-2.5

2.7

31.4

42.8

Minor BPS

45.1

-0.3

2.4

65.34

45.2

Associated Gene:

Gene:

PRDM11

Ensembl Gene ID:

ENSAPLG00000006096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042906

12040160 - 12079677

39518