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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12099004_12125354_R

Intron Information:

Intron Rank:
145194
Intron Class:
major
Intron Phase:
Intron Coordinates:
12099004 - 12125354
Intron Length:
26351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
73.2
0.73
1.5
81.71
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025545
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029678
12098915 - 12125436
26522