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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_121213_133551_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121213 - 133551
Intron Length:
12339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATGCTGAACA
Flanking Amino Acid:
NRPRKLCKHSSTSSRVAKGI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
54.4
0.13
1.9
65.32
40.3

Associated Gene:

Gene:
BTBD10
Ensembl Gene ID:
ENSAPLG00000004601
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004752
121054 - 156470
35417