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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12121657_12125354_R

Intron Information:

Intron Rank:
145193
Intron Class:
major
Intron Phase:
Intron Coordinates:
12121657 - 12125354
Intron Length:
3698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TGTTTGTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.1
0.54
1
67
43.8
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
74.6
0.85
1.2
84.67
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025545
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041027
12121361 - 12129007
7647
ENSAPLT00000027895
12121361 - 12125747
4387