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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1214169_1214586_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1214169 - 1214586
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGAACAG
5'SS Class:
weak_major
3'SS Sequence:
TTATTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTA
Flanking Amino Acid:
EKKRGGGGGRRSKKGAGEFD
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
46.7
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
81.2
34.9
Minor 5ss
28.8
-2.4
3.3
29.5
43.3
Minor BPS
61.7
0.36
1.7
75.93
35.7

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156