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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1214734_1215171_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1214734 - 1215171
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTATTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
ACAACTATAATA
Flanking Amino Acid:
LLRQKLLKEQEEKRLREKEE
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.2
62.6
36.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
45
-0.5
2.8
60.3
44.2
Minor BPS
49.1
-0
1.6
56.18
36.9

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156