Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12159778_12171775_F

Intron Information:

Intron Rank:

138299

Intron Class:

major

Intron Phase:

Intron Coordinates:

12159778 - 12171775

Intron Length:

11998

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

CACATCCTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAT

U12 Branch Point Sequence:

TTTCCTTCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.2

39.6

Major BPS

82.6

0.81

0.8

71.7

Major PPT

67.7

0.4

0.9

57.6

38.1

Minor 5ss

-2.5

33.4

41.6

Minor BPS

0.12

73.01

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024409

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026962

12159190 - 12175215

16026