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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1218617_1218804_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1218617 - 1218804
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACA
Flanking Amino Acid:
LQECKQTLLKARHVAPSDTV
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.6
29.1
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
69.6
0.61
1.9
85.1
33.8

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156