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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1218922_1220858_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1218922 - 1220858
Intron Length:
1937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TTTTCAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATT
Flanking Amino Acid:
QKQYISAVQMYENCLRKFYK
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
67.8
38.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
82.8
32.4
Minor 5ss
46.3
-0.4
2.9
63.2
42.2
Minor BPS
66.4
0.59
1.4
80.75
35.2

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156